Unisci query che restituisce ORA-30926:impossibile ottenere un set stabile di righe nelle tabelle di origine

Probabilmente hai duplicati nei dati. DISTINCT non garantisce che tu abbia IdToUpdate unico quando lo utilizzi con altre colonne. Vedi:

CREATE TABLE #MyTable(IdToUpdate INT, LogSetIdToUpdateTo INT);

INSERT INTO #MyTable VALUES (1,1), (1,2), (2,1),(3,1);

SELECT DISTINCT IdToUpdate, LogSetIdToUpdateTo
FROM #MyTable;

LiveDemo

Riceverai IdToUpdate due volte. Controlla i tuoi dati:

with cte AS (
  select distinct nullLogSetId.Id as IdToUpdate,
                  knownLogSetId.LogSetId LogSetIdToUpdateTo
  from MyTable knownLogSetId 
  join MyTable nullLogSetId
    on knownLogSetId.IdentifierType = nullLogSetId.IdentifierType 
   and knownLogSetId.Identifier = nullLogSetId.Identifier 
  where 
    knownLogSetId.IdentifierType = 'DEF'
    and knownLogSetId.LogSetId >= 0 
    and nullLogSetId.LogSetId = -1
)
SELECT IdToUpdate, COUNT(*) AS c
FROM cte
GROUP BY IdToUpdate
HAVING COUNT(*) > 1;

Un modo per procedere è utilizzare la funzione di aggregazione(MAX/MIN) invece di DISTINCT :

merge into MyTable
using
(

  select nullLogSetId.Id as IdToUpdate,
         MAX(knownLogSetId.LogSetId) AS LogSetIdToUpdateTo 
  from MyTable knownLogSetId 
  join MyTable nullLogSetId
    on knownLogSetId.IdentifierType = nullLogSetId.IdentifierType 
   and knownLogSetId.Identifier = nullLogSetId.Identifier 
  where 
    knownLogSetId.IdentifierType = 'DEF'
    and knownLogSetId.LogSetId >= 0 
    and nullLogSetId.LogSetId = -1
  GROUP BY nullLogSetId.Id
) on (Id = IdToUpdate)
when matched then
update set LogSetId = LogSetIdToUpdateTo