La differenza di tempo SQL tra due date risulta in hh:mm:ss

declare @StartDate datetime, @EndDate datetime

select @StartDate = '10/01/2012 08:40:18.000',@EndDate='10/04/2012 09:52:48.000'

select convert(varchar(5),DateDiff(s, @startDate, @EndDate)/3600)+':'+convert(varchar(5),DateDiff(s, @startDate, @EndDate)%3600/60)+':'+convert(varchar(5),(DateDiff(s, @startDate, @EndDate)%60)) as [hh:mm:ss]

Questa domanda ti sarà utile.